rs49543871 SNP Detail

Summary

• ID
  rs49543871
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28045183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GGAAGTGGGA GGTTGGGCAT GTATCTGCTT GGGGGTGGGC
  GTGGCACGGG AGGTTGGGCA TGTATCTGCT TAGGGGGGTG GGCGTGGTGT GGGAGGTTGG
  R
  CATGTATCTG CTTGGGGGTG GGCGTGGCAC GGGAGGTTGG GCATGTATCT GTTTAGGGGG
  GTGGGCGTGG CAAGGGAGGT TGGGCATGTA TCCGCTTCTG G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145419805	ENSMUSSNP2734505	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49543871					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28045183 () rs orientation: forward

Symbol	Name	Function Class
Gm65125	predicted gene, 65125	12 bp downstream
Rr405125	regulatory region 405125	within coordinates
Rr405126	regulatory region 405126	1048 bp upstream
Tssr143360	transcription start site region 143360	960 bp downstream
Tssr143361	transcription start site region 143361	909 bp downstream
Tssr147072	transcription start site region 147072	165 bp upstream
Tssr147073	transcription start site region 147073	715 bp downstream