rs49543891 SNP Detail

Summary

• ID
  rs49543891
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:52092550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTA CTGTATGTAT CTTGAGGCTA
  S
  GTGTGCATTA GCCTCTATTC CCTGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60215985	NES15722945	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49543891					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60215985	NES15722945	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:52092550 () rs orientation: forward

Symbol	Name	Function Class
Alcam	activated leukocyte cell adhesion molecule	within coordinates
D330040H18Rik	RIKEN cDNA D330040H18 gene	within coordinates
Tssr141407	transcription start site region 141407	1463 bp upstream
Tssr141408	transcription start site region 141408	1409 bp upstream
Tssr141409	transcription start site region 141409	907 bp upstream
Tssr141410	transcription start site region 141410	824 bp upstream
Tssr141411	transcription start site region 141411	680 bp upstream
Tssr141412	transcription start site region 141412	657 bp upstream
Tssr141413	transcription start site region 141413	417 bp upstream
Tssr141414	transcription start site region 141414	106 bp upstream
Tssr141415	transcription start site region 141415	4 bp downstream
Tssr141416	transcription start site region 141416	1250 bp downstream
Tssr141417	transcription start site region 141417	1772 bp downstream
Tssr141418	transcription start site region 141418	1981 bp downstream