rs49543962 SNP Detail

Summary

• ID
  rs49543962
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:87752864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACATGT ACACAGAGCT
  AGATTCTGAG GTCTCAAATC TTATGAGATT CTTCGTTAGA AGACTCTTAA GCTGTTAGTG
  GTGGTAAAGG CCTTGGAAGC CTTTCAATTC TGCCTCTTTA TTTTAAAGAC TGGGATACTG
  GGATCTGGAC ATAGGTGAGA TCTCTAATTG GTTTCTAAGC TTCTTCTGGG CACCAAGTCA
  S
  AACTATCAAG TGAACCGAGT AAAAAGAGAA GAAGGGCACA GAATTGGACA TGGGGATTTA
  ATATTTGTCT GCCAGAAGAC AGCTTGCAAG TGCTATCAAG AGTGCTGAAT TTTCTGGGGA
  AGGTGGCAAT CAACTCCCAG AAGAAGGTGG GTCTTAGTGA CCTTTGCAAT CACTACAAGC
  AAGATTGTCA TGGGGCAGAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61301449	NES16910358	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49543962					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61301449	NES16910358	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:87752864 () rs orientation: forward

Symbol	Name	Function Class
Igf1	insulin-like growth factor 1	within coordinates
Tssr95099	transcription start site region 95099	1689 bp downstream
Tssr95100	transcription start site region 95100	694 bp downstream
Tssr95101	transcription start site region 95101	626 bp downstream
Tssr95102	transcription start site region 95102	583 bp downstream
Tssr95103	transcription start site region 95103	564 bp downstream
Tssr95104	transcription start site region 95104	495 bp downstream
Tssr98816	transcription start site region 98816	1648 bp upstream