rs49544752 SNP Detail

Summary

• ID
  rs49544752
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148711985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGATCTCAAA GTCACTGTGT AGCCCAGGCT GTCCTTTAAC
  TCATCAAGGC TGCCAAGTGT GGATGCTGCC CTAGCAGTCT ACACGATAGT CGTGATACTC
  W
  CTCCTCTTTC AATAAGTGAA GAAACTGAGG CACAGAGTTG AGTACCTTGC ATGAAGTCAC
  CATGAGAAAG AGGCCCCACT AGGGTCTGAA TCCTACAGC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148013317	ENSMUSSNP6616849	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49544752					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148711985 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15308	CpG island 15308	316 bp distal
Rr100546	regulatory region 100546	within coordinates
Rr398860	regulatory region 398860	278 bp downstream
Tardbp	TAR DNA binding protein	509 bp upstream
Tssr44612	transcription start site region 44612	782 bp upstream
Tssr44613	transcription start site region 44613	753 bp upstream
Tssr44614	transcription start site region 44614	495 bp upstream