rs49546128 SNP Detail

Summary

• ID
  rs49546128
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40643270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGG CTTTATAAAA CAGAGTTGGC
  A
  GTTTTTACAG GCATAACTTA ATTTT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136336786	ENSMUSSNP2900855	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss322918979	CHEV_9_40540057	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49546128					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40643270 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Cpgi21598	CpG island 21598	869 bp distal
Gm68229	predicted gene, 68229	372 bp upstream
Gm68234	predicted gene, 68234	305 bp downstream
Rr1916	regulatory region 1916	within coordinates
Rr676903	regulatory region 676903	1017 bp distal
Rr676904	regulatory region 676904	383 bp distal
Rr676905	regulatory region 676905	4 bp distal
Rr676906	regulatory region 676906	379 bp proximal
Tssr84462	transcription start site region 84462	996 bp downstream
Tssr84463	transcription start site region 84463	960 bp downstream