rs49546605 SNP Detail

Summary

• ID
  rs49546605
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164266857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTC CCGCCCTCAG TAGCCCCGAA
  W
  GCGTTCTCAC CTTGCCAGTG CACTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145978611	ENSMUSSNP1556919	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
ss320086027	CHEV_1_166369419	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49546605					SNP	A	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164266857 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Nme7	NME/NM23 family member 7	1987 bp downstream
Tssr9784	transcription start site region 9784	781 bp downstream
Tssr14731	transcription start site region 14731	1863 bp upstream
Tssr14732	transcription start site region 14732	1528 bp upstream
Tssr14733	transcription start site region 14733	1429 bp upstream
Tssr14734	transcription start site region 14734	1384 bp upstream
Tssr14735	transcription start site region 14735	1330 bp upstream
Tssr14736	transcription start site region 14736	1289 bp upstream
Tssr14737	transcription start site region 14737	1229 bp upstream
Tssr14738	transcription start site region 14738	1093 bp upstream
Tssr14739	transcription start site region 14739	909 bp upstream
Tssr14740	transcription start site region 14740	868 bp upstream
Tssr14741	transcription start site region 14741	791 bp upstream
Tssr14742	transcription start site region 14742	749 bp upstream