rs49546740 SNP Detail

Summary

• ID
  rs49546740
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82601433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGGCTGTG AGTACAAGCA
  GGGCATCAGG TGGAAGGGCC TGTGCTCCAG GCGGGTGCTC CAGGTAGGTG CTCCAGGCAG
  GTGCTCCAGG CAGGTGCTCC AGACGGGTGT TCAGTGGCTA CTAGAAAACA GCACTGATGT
  GTCTGCCGTT ACATTTCAAA AAAGAAGTCA CCTGAGGCTT GGCTGGACTC TGGACTCCTG
  Y
  GTTTCAGTCC AGGTACACTG TGTTTTCTAG AACAGAGATT CTAAGACTTC CCAAGAAGTC
  AGTGCTCTGC AGGGCCCAGG CATAGCTCTG CCCATGATAC ACATAGGAAA AACTGGGTCA
  GGTCAAGAGA GCTCTCCGGG TGAGGCCAGG GCCCCTATCC TGGAGGAGGA CATCGCCCAG
  GTCTGCATCC CTGGTTTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401436711	MGP_WTSI_18_82752700	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs49546740					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401436711	MGP_WTSI_18_82752700	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82601433 () rs orientation: forward

Symbol	Name	Function Class
Gm58829	predicted gene, 58829	1314 bp downstream
Mbp	myelin basic protein	within coordinates
Rr541827	regulatory region 541827	357 bp proximal
Tssr152152	transcription start site region 152152	800 bp upstream
Tssr152153	transcription start site region 152153	828 bp upstream
Tssr152154	transcription start site region 152154	942 bp upstream
Tssr152155	transcription start site region 152155	980 bp upstream
Tssr152156	transcription start site region 152156	1053 bp upstream
Tssr152157	transcription start site region 152157	1104 bp upstream
Tssr152158	transcription start site region 152158	1161 bp upstream
Tssr152159	transcription start site region 152159	1191 bp upstream
Tssr152160	transcription start site region 152160	1241 bp upstream
Tssr152161	transcription start site region 152161	1258 bp upstream
Tssr152162	transcription start site region 152162	1274 bp upstream
Tssr152163	transcription start site region 152163	1299 bp upstream
Tssr152164	transcription start site region 152164	1339 bp upstream
Tssr152165	transcription start site region 152165	1392 bp upstream
Tssr152166	transcription start site region 152166	1458 bp upstream
Tssr152167	transcription start site region 152167	1473 bp upstream
Tssr152168	transcription start site region 152168	1508 bp upstream
Tssr152169	transcription start site region 152169	1569 bp upstream
Tssr152170	transcription start site region 152170	1650 bp upstream
Tssr152171	transcription start site region 152171	1710 bp upstream
Tssr152172	transcription start site region 152172	1817 bp upstream
Tssr152173	transcription start site region 152173	1840 bp upstream
Tssr152174	transcription start site region 152174	1858 bp upstream
Tssr152175	transcription start site region 152175	1881 bp upstream
Tssr154083	transcription start site region 154083	909 bp downstream
Tssr154084	transcription start site region 154084	933 bp downstream
Tssr154085	transcription start site region 154085	1205 bp downstream
Tssr154086	transcription start site region 154086	1760 bp downstream
Tssr154087	transcription start site region 154087	1975 bp downstream