rs49547688 SNP Detail

Summary

• ID
  rs49547688
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:65072568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CATGCCAAGA TCACAGCGGT GCTCAGGACT GTAGGGATTC
  TCGGAGTAAG CTCAAGGATT GTCAGGCCAA GTTCTCAGCA CAAAGGCGTG CCAGAGGACA
  R
  CCCCAGCAGG GACAGGGTAC TAGAGAGGAT GTAAGGAACA GACGAGAGGA GGGATGAGTC
  AGACGCCAAG ACTGGGAGGC TTTGCAACTT CTGACTGTCT G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss145836188	ENSMUSSNP6096003	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs49547688					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:65072568 () rs orientation: forward

Symbol	Name	Function Class
Dreh	down-regulated in hepatocellular carcinoma	1538 bp upstream
Rr392835	regulatory region 392835	617 bp downstream
Rr529706	regulatory region 529706	within coordinates