rs49547787 SNP Detail

Summary

• ID
  rs49547787
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:90077929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTCC CAGTGATTCA CCTCTTCATA
  T
  AAGGCCACAC ACCTCCAGTC CTTCC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss132586238	ENSMUSSNP700141	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss323794543	CHEV_11_90048417	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49547787					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:90077929 () rs orientation: forward

Symbol	Name	Function Class
Gm45883	predicted gene 45883	1005 bp upstream
Gm56326	predicted gene, 56326	1976 bp upstream
Smim36	small integral membrane protein 36	580 bp upstream
Tssr104108	transcription start site region 104108	555 bp upstream
Tssr104109	transcription start site region 104109	598 bp upstream