rs49547793 SNP Detail

Summary

• ID
  rs49547793
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:88200433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTAG GAAACCCAAC AGCAGACGTC
  Y
  GCCTCTTTTC TGAAGCCTGC CTGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145439827	ENSMUSSNP573405	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49547793					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:88200433 () rs orientation: forward

Symbol	Name	Function Class
Cbln1	cerebellin 1 precursor protein	1213 bp upstream
Cbln1os	cerebellin 1 precursor protein opposite strand	within coordinates
Cpgi20772	CpG island 20772	99 bp distal
Gm27016	predicted gene, 27016	1484 bp downstream
Rr666962	regulatory region 666962	478 bp distal
Rr666963	regulatory region 666963	1283 bp distal
Rr666964	regulatory region 666964	830 bp distal
Rr666965	regulatory region 666965	744 bp distal
Rr666966	regulatory region 666966	within coordinates
Rr666967	regulatory region 666967	465 bp proximal
Rr666968	regulatory region 666968	1826 bp proximal
Tssr2634	transcription start site region 2634	1276 bp upstream
Tssr78595	transcription start site region 78595	1023 bp downstream
Tssr78596	transcription start site region 78596	1011 bp downstream
Tssr78597	transcription start site region 78597	983 bp downstream
Tssr78598	transcription start site region 78598	956 bp downstream
Tssr78599	transcription start site region 78599	925 bp downstream
Tssr78600	transcription start site region 78600	911 bp downstream
Tssr78601	transcription start site region 78601	895 bp downstream
Tssr78602	transcription start site region 78602	642 bp downstream
Tssr78603	transcription start site region 78603	548 bp downstream
Tssr78604	transcription start site region 78604	407 bp downstream
Tssr78605	transcription start site region 78605	387 bp downstream
Tssr82314	transcription start site region 82314	1672 bp upstream
Tssr82315	transcription start site region 82315	1609 bp upstream
Tssr82316	transcription start site region 82316	1544 bp upstream
Tssr82317	transcription start site region 82317	1424 bp upstream
Tssr82318	transcription start site region 82318	1234 bp upstream
Tssr82319	transcription start site region 82319	1208 bp upstream
Tssr82320	transcription start site region 82320	1191 bp upstream
Tssr82321	transcription start site region 82321	1172 bp upstream