rs49547927 SNP Detail

Summary

• ID
  rs49547927
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77957321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGAAGG AAAGTTTTAT
  GCGTGGAAGA AGTCCACCCG TTAGGTAGGA ATCAGAGGTC ATAGCTAGGC CGAACCCTCC
  GTACCGAGAT GACAGAGAGG TCCTGGACCA GAAAAGGGCA GTATAATATG ACTCTCCTGT
  TTGCTTTCTT TGACAGTTTC AAACATGACC GATGCCTGGG TTATGAATGC CACAGAGAGG
  R
  GATGTTGCCA GAATGTAATA TCTAGGGAGT CAGTACATGA GACGGTCCCA CACCAATAAA
  AGTTATCTCA CCTCCAATGC CTAAAGCATT ACTATTATAC TCATGAAATC AGCCAGAAAG
  ATCCCAACAG ACTGGTGGCA GACTGAAGGG AATTCGGGGG TGGGTAAGAG AAGCATTAGC
  AGGTAAGGTC AGCTACTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61428325	NES16810811	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49547927					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61428325	NES16810811	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77957321 () rs orientation: forward

Symbol	Name	Function Class
Gcm1	glial cells missing homolog 1	1919 bp upstream
Tssr86256	transcription start site region 86256	1899 bp upstream