rs49547989 SNP Detail

Summary

• ID
  rs49547989
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:7281823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTT CTTAGTATAA GAAATGAAGT
  M
  AGACATTATA GTATATTCCC ATTAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss60965517	NES16157308	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	A	A	C	C	A
ss148198447	ENSMUSSNP3878791	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs49547989					SNP	C	C	C	C	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60965517	NES16157308	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:7281823 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18306	CpG island 18306	271 bp distal
Gm45844	predicted gene 45844	535 bp upstream
Tssr64464	transcription start site region 64464	824 bp downstream
Tssr70610	transcription start site region 70610	779 bp upstream
Tssr70611	transcription start site region 70611	738 bp upstream