rs49548047 SNP Detail

Summary

• ID
  rs49548047
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:58110472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTG AAAGTGGTTT CTATAGTTAA
  R
  GAGATCATAC AGAACGTTTC CAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss132191979	ENSMUSSNP3328451	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss323688628	CHEV_11_58033148	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49548047					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58110472 () rs orientation: forward

Symbol	Name	Function Class
Irgm2	immunity-related GTPase family M member 2	Coding-Synonymous
Tssr101708	transcription start site region 101708	533 bp upstream
Tssr101709	transcription start site region 101709	835 bp upstream
Tssr101710	transcription start site region 101710	870 bp upstream
Tssr101711	transcription start site region 101711	1031 bp upstream
Tssr101712	transcription start site region 101712	1085 bp upstream
Tssr101713	transcription start site region 101713	1403 bp upstream
Tssr101714	transcription start site region 101714	1452 bp upstream