rs49548841 SNP Detail

Summary

• ID
  rs49548841
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:15076452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAACAACCT GCCCCTCAGA
  TCGCCAGCAA GGCAGAGGCC AGTGTGTGCC AGGGCAGGAG AACTCCGCCT AGTGTTCTTA
  GGGATTCAGA CACCCACCCA TACCTTCTTT GGTTGCCTTC ATGCTATTTG GCAGTTGCCT
  TTCTGAGGAA GAGACTTGAT TGCAATAATG ACCACACAGG GGTAGCAGGT GGAGCCTCAG
  R
  GAGCATGAAC TGGGTTCTTT TTAGTCCTGC GCCTGGAGGA AGGCTGAGTG ATTATGTATT
  CCCTGTCCAC CAAACTCCAG TGGTGATCAG ACACGTGGCC ACCAGACTAG GGTGCTAACT
  GCAACTGGCG GAGGGCCTGG GTTTTAAAAG CGTTTCACTC AACAATGAAA CTCAAATCTT
  CCCTCTTTCC TTCTGCAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148695693	ENSMUSSNP6045924	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49548841					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15076452 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20129	CpG island 20129	796 bp proximal
Gm37844	predicted gene, 37844	within coordinates
Kbtbd11	kelch repeat and BTB (POZ) domain containing 11	within coordinates
Rr660168	regulatory region 660168	121 bp distal
Rr660169	regulatory region 660169	952 bp proximal
Rr660170	regulatory region 660170	1723 bp proximal
Tssr76486	transcription start site region 76486	715 bp upstream
Tssr76487	transcription start site region 76487	734 bp upstream
Tssr76488	transcription start site region 76488	847 bp upstream
Tssr76489	transcription start site region 76489	930 bp upstream
Tssr76490	transcription start site region 76490	1307 bp upstream
Tssr76491	transcription start site region 76491	1506 bp upstream
Tssr80488	transcription start site region 80488	1168 bp downstream