rs49550036 SNP Detail

Summary

• ID
  rs49550036
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:85878766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AGCGCCGCGA GCTTGGGGGC CCGCGCCGCG CCCGGAGCCG
  CGCGCTCCCG GGCCACTCGG CTGCAGGTGA GACGCGGGGG ACGCGGGGAC CAGGGGCGCA
  T
  GGGGGGTTGG GAGCATCTAG GACCGGGTTC TCCGCGCCCA CTCATGCCCT GCCCAGCTCG
  GCAGCTGCTC TCGATGCTGC CTGGAGGGGA CTGACACCTT T                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MSM/Ms
ss135442591	ENSMUSSNP4664680	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	MSM/Ms
rs49550036					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:85878766 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13322	CpG island 13322	within coordinates
Rr579285	regulatory region 579285	340 bp distal
Rr579286	regulatory region 579286	within coordinates
Rr579287	regulatory region 579287	1994 bp proximal
Sh3d19	SH3 domain protein D19	within coordinates
Tssr29770	transcription start site region 29770	284 bp downstream
Tssr29771	transcription start site region 29771	223 bp downstream