rs49550274 SNP Detail

Summary

• ID
  rs49550274
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:12504480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTCTACA GCTGAACACA
  GCCACGTATA TCGATTGTAG ACCTGAGAAC TCCAGCTGGT ATGGAACTGG AAGCTTCCTC
  CTTGCTGCCT GGCTTTTGCT TTGCTAGAAG GCATTTTTGT AGGCTACCGG TGGAGTTTTG
  TTTTGGTTTG TTTTGTTTGT TTGTTTGTTT TACAGCAGTC CCCCAGGGCT GCAGATCCTG
  Y
  AAGCTGTATT ATCAACATGA AACCTTGTGT TTACTGATAC AATAGTGGCT TGACTGCTAG
  GTGTATAACC AACTGCTTCT TGGTTGGATT CGAGCCTGTT CCACATCTGG TGCTGTCAAC
  CCTGTAAGTA TTCTTTGCTC TGGGAGACCT TGAATGTAAT GAGAAAACCA CCGCTGTTGT
  TTTAGTAAAC AGATATGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148678642	ENSMUSSNP5764839	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49550274					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:12504480 () rs orientation: forward

Symbol	Name	Function Class
Gm56835	predicted gene, 56835	within coordinates
Rr381713	regulatory region 381713	within coordinates