rs49550781 SNP Detail

Summary

• ID
  rs49550781
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40578401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCACTAA AATAAAGTCA
  AAGATAAATT GCTTTTTAAA TTAAATTTTT AGGTTGGCAT GAAAAGTGGT GGGTTTCAGA
  TCTTCAAGCT TTTTAAGGGA GGCACTTTTT CAATTGCATT GTCTCCCCAG CCCAAAAACA
  GTATTCTTAA CAACCTTTCT GTGCCCACTC CCCAAAGAAG GCAGCACACA AAACACACAC
  K
  GCAGCCCATG GCCTGGACCA GGAGAAGGAA TGTGTTAGGA GGAGGATGGT TTGTGCTGTG
  CTTTACGGCG CTTTCATTAT GATCCCAGGG AAAGATCTTT AAAAGAATAT TGTAATAAAA
  ATGCCTAAAT ATAAGAATAA AATCAGTGAC ACCAGTGAGA GACCTGCTAA GGATGGAGTT
  AGAAATCCAG TTTTTACTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	CAST/EiJ	MOLF/EiJ	WSB/EiJ
ss60393132	NES15896638	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	CAST/EiJ	MOLF/EiJ	WSB/EiJ
rs49550781					SNP	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60393132	NES15896638	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40578401 () rs orientation: forward

Symbol	Name	Function Class
1700017G19Rik	RIKEN cDNA 1700017G19 gene	1340 bp upstream
Rr575827	regulatory region 575827	441 bp distal
Rr575828	regulatory region 575828	511 bp distal
Rr575829	regulatory region 575829	1031 bp proximal
Rr575830	regulatory region 575830	1287 bp proximal
Tssr33066	transcription start site region 33066	1334 bp upstream