rs49550880 SNP Detail

Summary

• ID
  rs49550880
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:74604933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCTGTGT GGGGACCCAG
  ATGGTCAGGG ATCCGTGGTC AGAAAAGGGG ATCCCAGTTC TGTCCCACGC AGATCCTACT
  GACCAATCTC CAGGGAGTAG AGCGTAGTCT TGCACATGGT TTCATTGATG TGGCAGTGGG
  TGGTGGTGAC ACAGTTGGAT GCACTCACAG GATTCGCACA GGTGTAGCAC TGTAAGGCCA
  G
  AGCTAGGAGA GGAGGGATGA GAGGGCAGTG AACAGGCCTT CCTGTCTCAA AAGCCCAAAA
  TGTCTTCACC CAATGTCCTG CTCTGCCATG GAGGCTTAGT CTCAGAAGAC AAGGACACTA
  ACCAGGGACC AGATGCCCAC TAACCAAGCT CAGGGGAGAC AACATGACCA TTGAATCAGG
  GTCTTACAGA ATGTGCCCCT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss148149728	ENSMUSSNP1202830	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs49550880					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:74604933 () rs orientation: forward

Symbol	Name	Function Class
Gm33124	predicted gene, 33124	1797 bp upstream
Lypd2	Ly6/Plaur domain containing 2	within coordinates
Tssr134735	transcription start site region 134735	1208 bp downstream
Tssr134736	transcription start site region 134736	1230 bp downstream
Tssr134737	transcription start site region 134737	1274 bp downstream
Tssr134738	transcription start site region 134738	1676 bp downstream