rs49551048 SNP Detail

Summary

• ID
  rs49551048
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:94370968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAAGTGCCC ACAGAGGGCA GAGCTGGGGT TACAGGCAGT
  TGTAAGCTGC CTCGTATGGC TTCTGGGAAT CACACTCAGA CCTTTAGAAA AAGCAATATG
  Y
  GCTCTTAGCC ACTGAGCCAT CTCTCCAGTC CTGTGTTTGT TTGCCTGTTT GTCTGTTTGT
  GGCAGGGCTA CAAGCTACAT CCACATGCGC ACTTGTGGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135505409	ENSMUSSNP5633235	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49551048					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94370968 () rs orientation: forward

Symbol	Name	Function Class
Riiad1	regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1	1322 bp downstream
Rr580631	regulatory region 580631	703 bp distal
Rr580632	regulatory region 580632	361 bp proximal
Rr580633	regulatory region 580633	1700 bp proximal