rs49552944 SNP Detail

Summary

• ID
  rs49552944
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:83813835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATAACTGA CAAGATCTAA
  AGATTAGATA TTAAAAGATC AACACAGAAA GAGGAGGGAG GTCAGATAAA AATGAATTAC
  AAAAACAGAA AACAAAAACC CACTAATGTT GTCCCTACCA ACCAGGCACG AGAATGAATG
  GAACCCAAAA CTAAGACCAA ACAAAGAAGG TTCTGAAGTA AGGTTGCTGT GGTTTGGGAA
  Y
  GGCCTGTCTA AGGCGATCCA CTCACTCGAT CGGCAGGTAC AACCATCACC TACTCTACAC
  TAGACATGCA CAAGAACGTC GGCTAGCTTT TTCCCTTTCT CTCTCTCTCT CTTTTTTTTT
  TTTCGTTTGG TTTTTCGAGA TATGGTTTCT CTGTATAGCT CTGGCTGTCC TGGAACTCTC
  TTTGTAGACC AGGCTGGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62950342	NES17406320	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49552944					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62950342	NES17406320	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:83813835 () rs orientation: forward

Symbol	Name	Function Class
Cox7a2l	cytochrome c oxidase subunit 7A2 like	within coordinates
Rr333502	regulatory region 333502	635 bp distal
Rr333503	regulatory region 333503	366 bp proximal
Rr336331	regulatory region 336331	within coordinates