rs49553844 SNP Detail

Summary

• ID
  rs49553844
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:167198955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCCGCTCCG GGAATGTGTT CTGTTCTAAT TCCCAAGGGT
  GTCCCAGTCA TCCCAGTACA GCTGAGCCAC CCTTCAGTGC CTTCATCTCT GAAGCTTGAG
  Y
  GACTCAGTCC AATGGAAAAT GCATGGGGTT TATAGTTAAG GCTCTGTTCA GCAACTAACT
  CTGATCCTCA GAAGCTATCG AGCATGTGAA GTGTGGCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60342652	NES15844347	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	C	T	T	C	T	T	C	T
ss146037781	ENSMUSSNP2349206	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49553844					SNP	T	T	T	T	T	T	T	C	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60342652	NES15844347	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167198955 () rs orientation: forward

Symbol	Name	Function Class
Mgst3	microsomal glutathione S-transferase 3	580 bp downstream
Rr396523	regulatory region 396523	1183 bp downstream
Rr422697	regulatory region 422697	1374 bp distal
Rr422698	regulatory region 422698	1301 bp distal
Rr422699	regulatory region 422699	1244 bp distal
Rr422700	regulatory region 422700	694 bp distal
Rr422701	regulatory region 422701	950 bp distal
Tssr14852	transcription start site region 14852	1031 bp downstream