rs49554244 SNP Detail

Summary

• ID
  rs49554244
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69002140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTTTCGCT ACTTTCCGAC TGTATAACCC GAAACCACGA
  GTCATCCATT CACCTTGGCC GCTACCATTT CTTATTTTTG AGATTTGTGA TTTGATTACA
  Y
  TTCTCACTTC CACTTCCTCC CTTCAAAACT TCCCAAACAC TCCTCCCAGC TCTCCTTCAA
  ATTCATGGCC TTCCACCCAC CCCCAATTGT TATTGCATG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss132349077	ENSMUSSNP1602134	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss323727522	CHEV_11_68924816	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs49554244					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69002140 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3105	CpG island 3105	45 bp distal
n-TScga3	nuclear encoded tRNA serine 14 (anticodon CGA)	314 bp downstream
n-TTagt5	nuclear encoded tRNA threonine 5 (anticodon AGT)	776 bp downstream
Per1	period circadian clock 1	1354 bp downstream
Rr402659	regulatory region 402659	441 bp downstream
Rr449875	regulatory region 449875	within coordinates
Rr449876	regulatory region 449876	721 bp distal
Rr449877	regulatory region 449877	668 bp proximal