rs49554306 SNP Detail

Summary

• ID
  rs49554306
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147785240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGGCATGG CTATACCTTG AGTCTCAGGA CTAGTACCAC
  AATGGTAAAG AAGGGCTAAG ACACCTAGAA GGCCTGGAGT TGGCACAGTG TCATCTCACC
  M
  TTTGACACCC AAACCTTCAC TGATACCTTT CTTCAGTGCT AGGCCTGTTT GTAGTGCACA
  TATGGATTTC CGAAAAGAGT ACCTTAGGAA CAATGTGGA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147906943	ENSMUSSNP4698819	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49554306					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147785240 () rs orientation: forward

Symbol	Name	Function Class
9030622O22Rik	RIKEN cDNA 9030622O22 gene	1143 bp downstream
Rr566828	regulatory region 566828	353 bp distal
Rr566829	regulatory region 566829	974 bp proximal