rs49554340 SNP Detail

Summary

• ID
  rs49554340
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9466185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTGCTTC CTGGTGGTGG
  GGTTTAACTT TTCTCTCCTG TGTTTACAAT TAGGAAAAGA AGCAGCACAC GCTTGTGGTA
  AGCAAACACT ACAAGTTGGC ACGTGATGTC ATGTGATAAA CACACTTGGG GCTGCCTCCA
  GGTGAAGACA GAGCCAAGAC TTCCTGTTTG CTCTTCAGAA CTCAGGCAGA AGCCTGACCT
  R
  TAGCCATGTC TATCCTTGGT ATATATATTC ACATACATGG ACATTGTGCA TACTTTGGTG
  TGTCTGTGTG TCTTTGTGTG TGTGTACATA CATGTGCAAT ATCGCATCCT GGGAATCTTT
  CTGTCTCATT GCTTAGCTTT TTCCATTTAA TTTTCTCAGA GAAACATGGC TTCATTCCAG
  GGACCCTAAC CGGGGTTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60369244	NES15871155	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49554340					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60369244	NES15871155	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9466185 () rs orientation: forward

Symbol	Name	Function Class
C030034L19Rik	RIKEN cDNA C030034L19 gene	1895 bp upstream
Gm55345	predicted gene, 55345	1050 bp upstream
Rr374488	regulatory region 374488	1062 bp downstream
Tssr28343	transcription start site region 28343	1869 bp upstream
Tssr28344	transcription start site region 28344	1924 bp upstream
Tssr28345	transcription start site region 28345	1986 bp upstream