rs49554426 SNP Detail

Summary

• ID
  rs49554426
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:55476307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAAACTAGG GCCCGGCATG GTGGCCCATG CCTTTAATCC
  CAGCAGTGGC TGTCCTGTAA CTCACTCTGT AGACTAGGCT GGCCTCAGAC TCAGAAATCC
  S
  CCTGCCTCTG CCTCCCAAGT GCTGGGATTA AAGGCCTGAG CCACCACTGC CCGGGTGATC
  TATGAAAATT TTTGGCTCAT TCTAGTCATA CAAACACAA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146361517	ENSMUSSNP2293063	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321127986	CHEV_4_55489179	CHEVERUD	SCREENING_POP	f	SNP		G	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49554426					SNP	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:55476307 () rs orientation: forward

Symbol	Name	Function Class
Gm12510	predicted gene 12510	within coordinates
Rr376520	regulatory region 376520	within coordinates
Rr592486	regulatory region 592486	1776 bp distal
Rr592487	regulatory region 592487	1683 bp proximal
Rr592488	regulatory region 592488	1741 bp proximal
Tssr37333	transcription start site region 37333	1277 bp upstream
Tssr37334	transcription start site region 37334	1419 bp upstream
Tssr37335	transcription start site region 37335	1565 bp upstream
Tssr37336	transcription start site region 37336	1616 bp upstream
Tssr37337	transcription start site region 37337	1879 bp upstream
Tssr41779	transcription start site region 41779	906 bp upstream
Tssr41780	transcription start site region 41780	1075 bp downstream