rs49554763 SNP Detail

Summary

• ID
  rs49554763
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112423139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCTGCCA GAACCCAGCT
  CCCCCTCTAG GCTTTAGGAG ACAATGGGTT CCTAAGTTCT TCCTGCTTTG GTGGCATAAG
  TGACAAATGA CAGGAGGTTG TGTTGTTCCA TGTTCTCCCC CACCCCCTTA CCTCTGCATG
  TTCCTCTGAA CAATAGAAAC CACTGAGACA CATTTCAAAG AGAGCTCCTT TATGTCGTTA
  K
  AGCTGAACAG ACTCAGTTTG CCATCAAGGT CATGTTCATG GGTTCTGGGG CTTAAGGCGT
  GTATATCTTT TCAGGAGTCA TTCTACAAAC CACTGAGCCC ACCCTGGTTC CATATAGCAG
  TGGGTTTGGA AACACTCCAG GCAACAGGCT AGAGTATCAG AAGGCTGACT TCAGCAGTTG
  TTCTTCTCCC AGTCCTGCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52696968	NES15533627	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	T	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49554763					SNP	G	G	G	G	G	G	T	G	G	T	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52696968	NES15533627	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112423139 () rs orientation: forward

Symbol	Name	Function Class
Ankrd55	ankyrin repeat domain 55	1846 bp upstream
Rr486330	regulatory region 486330	1356 bp proximal
Tssr121099	transcription start site region 121099	1891 bp upstream
Tssr121100	transcription start site region 121100	1911 bp upstream
Tssr121101	transcription start site region 121101	1975 bp upstream