rs49555103 SNP Detail

Summary

• ID
  rs49555103
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:27490861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGTTAGC CAAAAAACCC
  CTTTTTTTTG TCAAACCACA TTCAGTGAGT ATTACTGATA AGCAATATCA AAGTTGAAAC
  ATACTTCTAA AAGGAAAAGA AAGAGACCAT AGCCCCAAGA AAAGGGAATG TGAACATGAA
  CTGTACTTGG CATACTTTTA GTTTCTGAAA ACAATATTCT CATCAGTTAT GTGAACTTCC
  W
  TGGCTAGTAC TCCAAGCCTT AGGTTTTAAG TTAGCCCTGT GGGAATAATA ACAACAGAGA
  TGAAAATAGA TCTTCTGGTC CAAGGGTATA TGGCTTCTGT ATAAGAACAT TAAATTATAA
  GGTGCTACAC TAATTTAAGC CATCATAAAT GTATTTTAAA TATACTTTTT ATTATTAATA
  AATTTAAATC ACTTATCCTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61265614	NES16880852	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49555103					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61265614	NES16880852	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:27490861 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1405	CpG island 1405	1792 bp proximal
Gm36962	predicted gene, 36962	within coordinates
Lama2	laminin, alpha 2	within coordinates
Rr224629	regulatory region 224629	339 bp proximal
Tssr97144	transcription start site region 97144	1940 bp downstream
Tssr97145	transcription start site region 97145	1950 bp downstream
Tssr97146	transcription start site region 97146	1966 bp downstream