rs49556046 SNP Detail

Summary

• ID
  rs49556046
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70414944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAGATAC ACAAAGAACT
  CACTAGCCAT GGAAATATGC TTAACTAATT ATTCGGGGAA AACAAATCAA AATCATACAC
  TCACGTCCAC ATGCACTAGA ATGGCACGAT TTTTTTTTAT TCTACAAACC ATATTTAATT
  ATAAAATCAA GAATTTTAGT ATACAAGAAT TGAGTTGGCC CAAGTATTTA TATAAAGAAC
  Y
  AACCTACATA ATTCATTAGA CAAGAAATGA TTTCTTCATT GTAATGACTC TTTTTTTTTC
  CATATTTTTT TATTGGGTAT TTATTTCAAT TACATTTCCA GTGCTATCCC AAAAGTCCCA
  CACACGCTCC CCCACCCACT CCCCTACCCA CCCACTCCCA CTTCTTGGCC CTGGCGTTCC
  CCTGTACTGA GGCATATAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132372256	ENSMUSSNP7211035	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49556046					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70414944 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3188	CpG island 3188	1135 bp proximal
Psmb6	proteasome (prosome, macropain) subunit, beta type 6	1249 bp upstream
Rr369269	regulatory region 369269	946 bp upstream
Rr450320	regulatory region 450320	567 bp distal
Rr450321	regulatory region 450321	528 bp distal
Rr450322	regulatory region 450322	778 bp proximal
Tssr102728	transcription start site region 102728	1243 bp upstream
Tssr102729	transcription start site region 102729	1791 bp upstream
Tssr102730	transcription start site region 102730	1836 bp upstream
Tssr102731	transcription start site region 102731	1863 bp upstream