rs49556247 SNP Detail

Summary

• ID
  rs49556247
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88205156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CCACCGCGCC CTGCCCGCCT CGGCCGCCGT CCCAGCCTAC
  CTTCGCTATC AGCCGCTTCA TTAACGTCTG GAAGCGGCTA CTGCTTTCCT TAAGCTGCTG
  A
  TGCAGCCTGC GGTCCTGCCG ACCCATAGAC TCCATGGCGT ACGTGGCTCT CTGCCCGGCA
  CTGCACCCGC CCAAGCCCGT CCACAGATCA AACGTGGCGC C                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss144900307	ENSMUSSNP5628741	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49556247					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88205156 () rs orientation: forward

Symbol	Name	Function Class
Cpgi540	CpG island 540	within coordinates
Cpgi541	CpG island 541	713 bp proximal
Hjurp	Holliday junction recognition protein	within coordinates
Rr29783	regulatory region 29783	within coordinates
Tssr12873	transcription start site region 12873	140 bp upstream
Tssr12874	transcription start site region 12874	36 bp downstream
Tssr12875	transcription start site region 12875	76 bp downstream