rs49556991 SNP Detail

Summary

• ID
  rs49556991
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122034995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAACATCACA ACCAGGCAGC AGCAGCGAAT CAGGAACCTA
  AAAGAGAAAT GTATTTCTAA TAGGATTGTG TCACAATGTC CGGGGACACC ATTTGGGTGT
  S
  CTGAATAATT TTTCAAACCT GAGTTTGACA GCATAGGCTT TGGCAGTCTC CTTTTACCAG
  CAAGCATGAA AGGTTCGGGT GCAGGAAGAC ACACAGAAG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135737685	ENSMUSSNP2283220	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss320909853	CHEV_3_121944264	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49556991					SNP	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122034995 () rs orientation: forward

Symbol	Name	Function Class
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	1758 bp upstream
Rr375675	regulatory region 375675	1414 bp upstream
Rr584261	regulatory region 584261	1396 bp proximal
Rr584262	regulatory region 584262	1769 bp proximal
Rr584263	regulatory region 584263	1852 bp proximal
Tssr31477	transcription start site region 31477	1757 bp upstream
Tssr35442	transcription start site region 35442	1543 bp upstream