rs49557378 SNP Detail

Summary

• ID
  rs49557378
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135717436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTGCACTT AATTTTTTGA TTATCGTGTA
  TTTATCTATT TATCTGTCTA TCTACACGTT CCTGATTCCT AAttaagaaa aaccagtgtt
  ttcctcagtg agtgttggtg gggaaaggct cccaaccaca ggtaggggca gctcctagct
  Y
  gctttcgttc cacagccttg attcaagcta gggcactggt ggttttcttc atggttgcgc
  cggtaccttc tacgcaaatg tcagcatagt ctaaatggtc aaCCATACAG ACCAGGTCCT
  AACAGTCTAC ACTGTGAGAA ACACTACTTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145546359	ENSMUSSNP2908252	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss319993390	CHEV_1_137686275	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49557378					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135717436 () rs orientation: forward

Symbol	Name	Function Class
Rr419276	regulatory region 419276	1405 bp distal
Rr419277	regulatory region 419277	1698 bp distal
Rr419278	regulatory region 419278	548 bp distal
Rr419279	regulatory region 419279	730 bp distal
Rr419280	regulatory region 419280	36 bp proximal
Rr419281	regulatory region 419281	307 bp proximal
Tnni1	troponin I, skeletal, slow 1	Intron