rs49557604 SNP Detail

Summary

• ID
  rs49557604
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114952040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGT ACCTAGGGGC TCTTAGATTT
  R
  AATTAATAAC TAAAAACAGG TCACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss145319349	ENSMUSSNP5974070	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss324534386	CHEV_13_115605712	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs49557604					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114952040 () rs orientation: forward

Symbol	Name	Function Class
Gm34790	predicted gene, 34790	within coordinates
Rr280966	regulatory region 280966	1960 bp proximal
Rr389127	regulatory region 389127	1263 bp downstream