rs49557701 SNP Detail

Summary

• ID
  rs49557701
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54751622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCCCCGCA GGAGGAAGTT CAGGCGTTTG CTAAGCAGAG
  CTAAGTATAA AAACGCGAGA AGCCGCGGTG CCAAATTACG GACAGGAGGA CGGAAGTAGC
  Y
  GAGAAGCCAT GTTTGTTAGG GGCAGACTTC ACTCCGCCGC GCCTAGCGTG CCGCTCGCGC
  ACACTGTTTG TTACTGGGTG GCCTCGGAAC CTGCTCGTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss132140156	ENSMUSSNP2835339	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49557701					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54751622 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2891	CpG island 2891	within coordinates
Gm31490	predicted gene, 31490	within coordinates
Gm57377	predicted gene, 57377	within coordinates
Lyrm7	LYR motif containing 7	within coordinates
Rr386093	regulatory region 386093	within coordinates
Tssr3501	transcription start site region 3501	18 bp downstream
Tssr101539	transcription start site region 101539	within coordinates
Tssr101540	transcription start site region 101540	219 bp upstream
Tssr108005	transcription start site region 108005	193 bp upstream