rs49558052 SNP Detail

Summary

• ID
  rs49558052
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48917239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCTCCGG GGCTGAGATC
  TTTTTTTTTT CCCCTCCCAG GTAAGCACCA GGAATGATAA CTAGCAACAT GCTAAAGAAT
  TTTCTTTTTA TTCTGCTCAA GCACAAAAAT CTTACCTGGA GGCTTCACTG TTGGGGCCTT
  CCAATCTTTC CTGAGCTTTA ATACAGAAAA TAAATTCAAT TCCAGCACTT AGCAGCTGCC
  K
  CGTGGTGGGC GCTCTGAACA CAGTTGCTGA ACAAACGCTT TATGAGGCGG CTGTCTCCAT
  CATGTCTAGG GGTCTGATGG AGAGGAAGTC AGCTTTCCGT GCCTCAAATG GCCTAGCCTG
  CCTTGCTTGT ATAAGGAGAA TGAATTGTGT ATGTACAAGG AACAGATCTT GTCTCCGCAA
  AGAGGGTGGA TCTTGTTAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss145720324	ENSMUSSNP2341846	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49558052					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48917239 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9295	CpG island 9295	851 bp proximal
Gm64620	predicted gene, 64620	1278 bp upstream