rs49558115 SNP Detail

Summary

• ID
  rs49558115
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98939698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAATCCAGGC TGGAGAGATG GTGGCTCAGC AGTTAAGGGC
  ACTTGCTATC CCTTCCCTGC AGGGTTTAGG TCCCAGCACC CACGTGGCAG CTCACAGTCA
  Y
  CTGTAAGTTC AGTTCCAGGG GTCTCTCCTG GCCTCCAGGG GCACCACACA CACACACACA
  CACACGTGTA AGCACTCATA CACTTAAAAA TAAAAGTTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148463614	ENSMUSSNP6706411	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss325079658	CHEV_15_98872248	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49558115					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98939698 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7689	CpG island 7689	1447 bp distal
Gm41399	predicted gene, 41399	within coordinates
Gm62755	predicted gene, 62755	within coordinates
Rr509290	regulatory region 509290	1289 bp distal
Rr509291	regulatory region 509291	1311 bp distal
Rr509292	regulatory region 509292	519 bp distal
Rr509293	regulatory region 509293	635 bp proximal