rs49558162 SNP Detail

Summary

• ID
  rs49558162
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:162396602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAC TAAATAAGAC AGATACTCAC
  R
  CTGACCATAG AAATCACATT TCCTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145939899	ENSMUSSNP2672012	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320082935	CHEV_1_164499164	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49558162					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162396602 () rs orientation: forward

Symbol	Name	Function Class
Cpgi932	CpG island 932	1229 bp proximal
Rr396472	regulatory region 396472	1371 bp upstream
Rr421988	regulatory region 421988	992 bp proximal
Rr421989	regulatory region 421989	1483 bp proximal
Rr421990	regulatory region 421990	1561 bp proximal
Tssr9715	transcription start site region 9715	1564 bp upstream
Tssr9716	transcription start site region 9716	1634 bp upstream
Tssr9717	transcription start site region 9717	1654 bp upstream
Tssr14622	transcription start site region 14622	1249 bp downstream
Vamp4	vesicle-associated membrane protein 4	1482 bp upstream