rs49558340 SNP Detail

Summary

• ID
  rs49558340
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71248178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTAT GTAATAGGAG CGTGTATGGT
  A
  AGCATACCGT GTGTGTGCTT TGAGG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321817333	CHEV_6_71221188	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49558340					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71248178 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17522	CpG island 17522	208 bp proximal
Krcc1	lysine-rich coiled-coil 1	483 bp upstream
Mir8112	microRNA 8112	477 bp upstream
Rr379579	regulatory region 379579	1294 bp downstream
Rr379580	regulatory region 379580	within coordinates
Tssr56988	transcription start site region 56988	265 bp downstream
Tssr56989	transcription start site region 56989	381 bp upstream
Tssr56990	transcription start site region 56990	478 bp upstream
Tssr61348	transcription start site region 61348	468 bp upstream
Tssr61349	transcription start site region 61349	446 bp upstream
Tssr61350	transcription start site region 61350	287 bp downstream