rs49558404 SNP Detail

Summary

• ID
  rs49558404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31351625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAGGTAGG TAGGTAGGTA
  GGTAGATAGA TAGATAGATA GATAGATGAT AGATAGATAG ATAGATAGAT AGATAGATAG
  ATAGATAGAT AGATAGATAA ATGAGATATG TAGATAGGTG GGTAGGTGGG TAGATAGATA
  GGTAAACAGA CAGAATTTTT TTTCTGTCAG GCACATCTTG ACAGATCATA GCAGGGTGGA
  Y
  GAAATGGACT CCAAGACCAC TGTTATCTTC CTATCTCACC CAGGCACACA TATTTGAGGC
  TCACACTCCT ATGTGATCTG AGTGGAACTT AGTGGAACTC TCAATACAAG CAGCCCACCA
  TGGTAACATT GCTTGACCAG GACATTTTCA AGTCTACCAG CATCTCCTGC GGCCATGCTA
  CTATGTATCT CTGCTGTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60562198	NES16490542	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49558404					SNP	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60562198	NES16490542	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31351625 () rs orientation: forward

Symbol	Name	Function Class
Rr334776	regulatory region 334776	1825 bp distal
Rr341223	regulatory region 341223	577 bp proximal