rs49558611 SNP Detail

Summary

• ID
  rs49558611
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127346821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCTCCTC CAGGTTCTTA
  TTGCTGTTAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAT CTCCTTCTTA GATGAATGGG
  CAGCATGCCT GAGAAGGTGA GGGACAGACT GACTGACCCT GCCTTCAACC TTCACCTCAC
  CTCAGCTGGG ACTCCTGGGG ACCTCTTTAT GGCCCTTGCT TCTGTCCCAC CAGCCACCGC
  K
  CTCCCTTTCA AATGCTTAAG TTGGGACTGG GAGGGCCTGA TGGGAGTGTT GCAGCAGGAA
  CCGAAGGAGG TCTGCACCTG AAAGCCTGGG AAGGAAGCTT GTGGGCCAAT CAAGCTGGGG
  CCACGGGCTT CTGAGTCCAC AGCCCCAGGC AGCTCCTGTC ACCACCCCCT CATTACACTG
  CTAAGCTAAT GTGGGCTAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61334357	NES16949424	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49558611					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61334357	NES16949424	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127346821 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2360	CpG island 2360	1356 bp distal
Cpgi2361	CpG island 2361	589 bp proximal
Cpgi2362	CpG island 2362	1745 bp proximal
Rr402329	regulatory region 402329	1621 bp downstream
Rr402330	regulatory region 402330	1848 bp upstream
Rr440928	regulatory region 440928	1803 bp distal
Rr440929	regulatory region 440929	1191 bp distal
Rr440930	regulatory region 440930	974 bp proximal
Rr440931	regulatory region 440931	1137 bp proximal
Rr440932	regulatory region 440932	1332 bp proximal