rs49558817 SNP Detail

Summary

• ID
  rs49558817
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14305909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACTCTAGG GAGAGATGTC
  CCTGTGTGGT TTCACATACT TGATTCAATT CTCACATGAC TCATTTAAAG GAAATAACCA
  TTAAATCCCC CACCCTTTGC CACCACCTTT GTTGCTTCCA GTTATTATTT TTATTTATGT
  ATTTATTTTT TAATCAGTGT TTGAAGAACC CTGAGAACAT TTCGTCCCCA GAGAATTCAT
  Y
  CTGCCCTGGC CTGAGTAGCA GCACCCAGGC AGCTGGGACG CTGTAACCCT GACTCCTCTT
  TCCTCTACAG GACTGTCTTC AGCATTACCT CCACCTCCTC CGCCACCTCC TCCTCCACCT
  CCACCAGCAG GTCCCTCGCC AACCTCAGCC ACGGAGATGC CTGCTCCGTT CCTGCCCCAG
  CCTGTGAATG GTGTGAACCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62078351	NES17151207	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	T	T	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49558817					SNP	C	T	T	T	T	T	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62078351	NES17151207	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14305909 () rs orientation: forward

Symbol	Name	Function Class
Pxk	PX domain containing serine/threonine kinase	within coordinates
Rr487859	regulatory region 487859	1846 bp proximal