rs49559005 SNP Detail

Summary

• ID
  rs49559005
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:58371056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCC CCCAAACTCA TAACAGATTG
  A
  ATTATTATTA TTATTAATTA TTGGT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136522655	ENSMUSSNP1036051	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss322973232	CHEV_9_58311580	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49559005					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:58371056 () rs orientation: forward

Symbol	Name	Function Class
4930461G14Rik	RIKEN cDNA 4930461G14 gene	within coordinates
Gm32768	predicted gene, 32768	584 bp downstream
Gm32820	predicted gene, 32820	901 bp upstream
Tssr89910	transcription start site region 89910	947 bp upstream