rs49559528 SNP Detail

Summary

• ID
  rs49559528
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52250335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACCT ACTTTCCACA CACAGTGGGA
  T
  TCAAGGGTTA CCTTGTTCCT GTTTG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss139499031	ENSMUSSNP3813045	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss324626581	CHEV_14_52632553	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49559528					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52250335 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6436	CpG island 6436	966 bp proximal
Tssr128474	transcription start site region 128474	1973 bp upstream
Tssr128475	transcription start site region 128475	1681 bp downstream
Tssr128476	transcription start site region 128476	1859 bp downstream
Tssr128477	transcription start site region 128477	1983 bp downstream
Zfp219	zinc finger protein 219	within coordinates