rs49560760 SNP Detail

Summary

• ID
  rs49560760
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40480770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATAGTGCT TAAAGCTTGT
  TAATCATAGG GTTCTGTGTC AAGTATTTGG GAGCTAAAAT GGGTTAGAAC AGGAACAGAC
  AAGCCTTACA TCCTTAATTA CTGTGTTTAT TTGGCACCCA ACATGGGGGC ATAGAATCCA
  AGCCTGGTGA AAGGCAAGAG AACAAGCACT CCCCAGGAAC AGAGCAGGTT CCTAGATAGA
  Y
  ACAGGACCTG CCAAGGGATG AACTCCTGTG CCTGAAGATT AGCACTAGCA CCCAGGAGGC
  AGCGACTTGT AATGGTTTCC TAGCAACAGC TCTGGGACAA GCCTGCCTTC AGCACATACT
  AGCATCCCAG ATTCATGTGC AGCTCTAAGG TTAGCCACGA GCTAACACAG CTGGTGGGTT
  CCAGGGCTGC ACTGCGTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61273427	NES16894483	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49560760					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61273427	NES16894483	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40480770 () rs orientation: forward

Symbol	Name	Function Class
Rr214672	regulatory region 214672	231 bp proximal
Rr222650	regulatory region 222650	112 bp proximal
Slc22a16	solute carrier family 22 (organic cation transporter), member 16	642 bp downstream