rs49561280 SNP Detail

Summary

• ID
  rs49561280
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:107847345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAGCCGGTA AGGGCCGGGT TCCTCAAAGG CATGCAGACA
  GTCCCACCCA GGCCTTGCCA GAACAGGAAA ACCTATCCCT CTAACCTGTG TGTGTGTGGG
  T
  GGGGGGGGGG GATGGTTATA CCACTGTAAT CCAGTGTTTG GGAAGGTAAG GCAGGAGGAG
  AACCCTGCAT AGTGAGTTCT GGGCATCCCG GACTTTAGT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss136951181	ENSMUSSNP6337457	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs49561280					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107847345 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr686670	regulatory region 686670			1204 bp proximal
Traip	TRAF-interacting protein			Intron
				Noncoding-Transcript-Variant
Tssr87038	transcription start site region 87038			1954 bp upstream