rs49561506 SNP Detail

Summary

• ID
  rs49561506
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:18269373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CACACAGAAT
  TTCTTTTCTT TTATGGTTGC TCTAGAGAAT AAATAAGATG CTCATATAAA GTGCAGACCA
  CAGTGCAGGA CATATAGTGA GCTAGGAACA TGCTATTAGG ATACTAGTCC GGCTGTAGTC
  CTGCCAATCA AATAAGGATA CATGCTGGTG GTGGATGAGG TTAAAGTCCA GATAAGTGAA
  R
  CACAGATGGC ATCGTTCTCC TGGAAGTGTG AGAGGAAGGC ACCAGAGCAT GGAAAGGCAG
  AAGTTGAAAT TGGGAAGCAT GTTTGAGTAG TTGAGAGTAG CGCCCCTTGT GTGTGTTTCT
  ATGGAATGAA GAAAGGCTGT AGTGAGATAC ATGTCGACAG TCTCTGGCAC AAGGGCTGGC
  GGTCCAGAGC CCCAGACTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61577636	NES17527760	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49561506					SNP	A	A	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61577636	NES17527760	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:18269373 () rs orientation: forward

Symbol	Name	Function Class
Gm40879	predicted gene, 40879	557 bp upstream
Gm58964	predicted gene, 58964	1699 bp downstream