rs49561518 SNP Detail

Summary

• ID
  rs49561518
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24924887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGAGGTCA AAGGAGGTAA TGTCCTCTTG GTCCTCCTAA
  AGGAAGAGTG GGCATAGAGA ACACCATAAG AATATGCTGC CCTCCCCCAG GGCCTCTCAC
  T
  TCTGCCCAAG TCTGTCCTTA CCTGCTCCAG GCTCCGAAGC AAAGCCCCTG AGGCCACATC
  CAGGATGTTA ACTTTGGTAC CACAGACACA GAAGAGGTA                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145361716	ENSMUSSNP83989	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49561518					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24924887 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8740	CpG island 8740	1499 bp proximal
Rr405091	regulatory region 405091	1639 bp upstream
Rr523395	regulatory region 523395	1086 bp proximal
Rr523396	regulatory region 523396	1737 bp proximal
Tbl3	transducin (beta)-like 3	within coordinates
Tssr146772	transcription start site region 146772	1694 bp downstream
Tssr146773	transcription start site region 146773	1704 bp downstream