rs49561561 SNP Detail

Summary

• ID
  rs49561561
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:39111163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCTAATC TAGCTTCTCA
  CCTGTGCTCT GGGCTGACCA GTCTATAGGT AGCCATATTG AGGTCCTTTC TAAACCAAGA
  GTAACAAGAT TCCAAGTTGG GAAAAATGAG TTAAGGGGCA ACCAGAAGGT ATCAACCAGC
  ACTAAGAGAA AATGTTCATG CTTCAGAACA TGAACTTCTT GAAGGTTCTG AAGGCTCTTG
  Y
  GTTTCTGGTT CTAGTTTTCT ATTATGTTAG CCAAATTCTG GAGAGTTCAG GACTCTGGGT
  AAGGATAAAA GGATGAGCCT GCAGGTCATA AGCCCATTCA ACAGAATTTC ACAGGCCGAA
  GTTTCAAAAT AAATGTTCTG GGTCTGCTTT GTCAACAGAA TTTCTGAAGA GCAGGTATCT
  ACAACGGAGT TACTATTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61141287	NES16648249	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49561561					SNP	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61141287	NES16648249	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:39111163 () rs orientation: forward

Symbol	Name	Function Class
Gm71877	predicted gene, 71877	within coordinates
Gm71888	predicted gene, 71888	within coordinates
Gm71905	predicted gene, 71905	29 bp upstream