rs49561971 SNP Detail

Summary

• ID
  rs49561971
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38937875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTTTTGG GCTGAATGTG
  ACCCATTTTT TTGCATTGCC CTTTTTTTTT TTATTAAAGC GAAGACTATA CACTTATTTC
  ACAGATTAAA CACTCCATTC TACAGAATGA ATTCAATTAC CTGTTTTCTC AACTTAAATT
  CACTGGCAAG AGATGTTAAT TCCATTCTGT TGAGCTGCGA AGGCATTTTG CATGCTCCCC
  A
  ACAGACACCA GGCAGACCAG CAAAAATCCA CGGTCTTCCC CCAATATATC CGAGTGGTTT
  CCTCCCATTT TTATGTGATG GAGTAGTGAA CTGCGCAGGA TTAGCAAACA AAACTAAAGT
  CTTCTACAGT GTTCACACTC TCATAGCTGC GGTTTGTAGT CCCTTTGAAC AAACCTTAAT
  TCACGAATCT TTTCTGGCTT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134846107	ENSMUSSNP4992700	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320724081	CHEV_3_38782648	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49561971					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38937875 () rs orientation: forward

Symbol	Name	Function Class
C230034O21Rik	RIKEN cDNA C230034O21 gene	within coordinates
Cpgi13105	CpG island 13105	1256 bp proximal
Gm56780	predicted gene, 56780	1963 bp upstream
Gm65329	predicted gene, 65329	940 bp downstream
Rr575715	regulatory region 575715	409 bp distal
Rr575716	regulatory region 575716	701 bp distal
Rr575717	regulatory region 575717	within coordinates
Rr575718	regulatory region 575718	747 bp proximal
Rr575719	regulatory region 575719	1810 bp proximal
Tssr28930	transcription start site region 28930	1586 bp upstream
Tssr28931	transcription start site region 28931	1957 bp upstream
Tssr28932	transcription start site region 28932	1984 bp upstream