rs49562213 SNP Detail

Summary

• ID
  rs49562213
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64205048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGC TGAGATGACG CTGTGCACCA
  C
  CATGTGTTTG GGTTGTTTTT TTTTT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss149158437	ENSMUSSNP918516	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss324378684	CHEV_13_64158542	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49562213					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64205048 () rs orientation: forward

Symbol	Name	Function Class
Gm30999	predicted gene, 30999	147 bp downstream
Hsd17b3	hydroxysteroid (17-beta) dehydrogenase 3	1032 bp downstream
Rr273309	regulatory region 273309	353 bp proximal