rs49562416 SNP Detail

Summary

• ID
  rs49562416
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52847178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCTCATG TCTTAGTAGG
  AGTCTCAAGC TGGGGATGTC CGTTCGATCG CTCTGAGTGC TCCCCTACTT GCTCTGAGTG
  CTCCCCTACT TGTCCCAGTT ACGGTAGAGG GACCACTCTT TGCCTAGGCA TACATACATC
  TCTATCAACA GGAAACACAT CCCCCAGTTG TGCCTTCAAT TCATTCACTG CTGTGTAACA
  Y
  TACTGAGCCA GCCTGGCCCT TGCCTGCCTG GGTACTTAAT GCCTGGGTAC TTAATGCCTG
  GACTAATCTT GCTTTCTTTT ACCTTTTATC TTCCCCACTC TTGCAGCCTA TTTCCCATTC
  AGTAGCTATT TTTAAAAACT GTCTATCAGA GTATGCCATT CTTCTGTTTT GGATCTCTTC
  CTTTGACTCT TTACTGCCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52422044	NES15408865	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		C	C	C	C		T
ss324040946	CHEV_12_53901382	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49562416					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52422044	NES15408865	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52847178 () rs orientation: forward

Symbol	Name	Function Class
Akap6	A kinase anchor protein 6	within coordinates
Gm51971	predicted gene, 51971	within coordinates
Gm59837	predicted gene, 59837	within coordinates
Rr466054	regulatory region 466054	387 bp distal